Plotting And Viewing

Static Matplotlib plot:

mol.plot()
mol.plot(color_by="chain")
mol.plot(show_bonds=False)

Jupyter viewer with py3Dmol:

viewer = mol.view(style="stick")

Animated spin GIF:

mol.spin_gif("spin.gif")

Contact map heatmap:

mol.plot_contact_map(cutoff=8.0, level="residue")

Distance matrix heatmap:

mol.alpha_carbons().plot_distance_matrix()